PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008476m
Common NameCICLE_v10008476mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 411aa    MW: 46506.3 Da    PI: 6.073
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008476mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-056791123
                     EEETTTTEEESSHHHHHHHHHH..T CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                     y+C+ Cgk ++++  L +H+++  H
  Ciclev10008476m 67 YSCGLCGKGYRSSKALAQHLNSrsH 91
                     99******************98666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.0099135IPR003604Zinc finger, U1-type
SuperFamilySSF576671.1E-5336No hitNo description
SMARTSM0035545428IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280628IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8686796IPR007087Zinc finger, C2H2
PfamPF128748.2E-46791No hitNo description
SMARTSM00451246798IPR003604Zinc finger, U1-type
Gene3DG3DSA:3.30.160.608.1E-46794IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.126791IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.15E-56798No hitNo description
PROSITE patternPS0002806991IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-7170230No hitNo description
PfamPF127562.5E-25185286IPR015880Zinc finger, C2H2-like
SMARTSM0035521234261IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MPGLTCNSCN REFNDDAEQK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QAALAQEKNK  60
NATPMTYSCG LCGKGYRSSK ALAQHLNSRS HIMRASQGTS NEEKEKVIIK PIPLRDVNKP  120
PRKREANNEE SEDSDDEWEE VGPDEVLVSE ATNSLTNLNV GSPADDDLEE DDDDGAFEEF  180
DPACCFMCDL PHDAIENCMV HMHKCHGFFI PDVEYLKDPK GLLTYLGLKV KRDFMCLYCN  240
DRCHPFNSLE AVRKHMEAKR HCKIHFGDGD DEEEAELEEF YDYSSSYMDE DGKQLISSSD  300
MANTVELGGG SELIITKRTD KGTSTKTFGS REYLRYYRQK PRPSPANNVA ITAALASRYK  360
SMGLATVQTR EHMVRMKVIK EMNRTGVEAM RTRVGMKNNI IRNLPKNVPY *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.197950.0flower| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450152.10.0hypothetical protein CICLE_v10008476mg
RefseqXP_006483574.10.0PREDICTED: zinc finger protein 622
SwissprotQ8H1G50.0REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBLA0A067FV100.0A0A067FV10_CITSI; Uncharacterized protein
TrEMBLV4UBI50.0V4UBI5_9R
STRINGVIT_04s0008g02540.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3429511